HL_8E3O_048

3D structure

PDB id

8E3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to solithromycin and VM1

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CG(PSU)AAC(3TD)A(PSU)AACG

Length

13 nucleotides

Bulged bases

8E3O|1|I|A|1912, 8E3O|1|I|A|1913, 8E3O|1|I|C|1914, 8E3O|1|I|A|1916

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E3O_048 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3876

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8E3O|1|I|C|1909
8E3O|1|I|G|1910
8E3O|1|I|PSU|1911
8E3O|1|I|A|1912
8E3O|1|I|A|1913
8E3O|1|I|C|1914
8E3O|1|I|3TD|1915
8E3O|1|I|A|1916
8E3O|1|I|PSU|1917
8E3O|1|I|A|1918
8E3O|1|I|A|1919
8E3O|1|I|C|1920
8E3O|1|I|G|1921

Current chains

Chain I

23S ribosomal RNA

Nearby chains