HL_8E41_015

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

8E41|1|I|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E41_015 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.0669

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8E41|1|I|C|487
8E41|1|I|G|488
8E41|1|I|G|489
8E41|1|I|C|490
8E41|1|I|G|491
8E41|1|I|A|492
8E41|1|I|G|493

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22