HL_8E41_023

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

8E41|1|I|A|781, 8E41|1|I|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E41_023 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1236

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

8E41|1|I|U|779
8E41|1|I|G|780
8E41|1|I|A|781
8E41|1|I|A|782
8E41|1|I|A|783
8E41|1|I|G|784
8E41|1|I|G|785

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2