HL_8E42_011

3D structure

PDB id

8E42 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and azithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8E42|1|I|G|329, 8E42|1|I|A|330, 8E42|1|I|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E42_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0728

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8E42|1|I|G|327
8E42|1|I|U|328
8E42|1|I|G|329
8E42|1|I|A|330
8E42|1|I|C|331
8E42|1|I|A|332
8E42|1|I|G|333
8E42|1|I|C|334
8E42|1|I|C|335

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4