HL_8E42_030

3D structure

PDB id

8E42 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and azithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GACGCUUAUGCGUU

Length

14 nucleotides

Bulged bases

8E42|1|I|C|1172, 8E42|1|I|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E42_030 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3408

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

8E42|1|I|G|1168
8E42|1|I|A|1169
8E42|1|I|C|1170
8E42|1|I|G|1171
8E42|1|I|C|1172
8E42|1|I|U|1173
8E42|1|I|U|1174
8E42|1|I|A|1175
8E42|1|I|U|1176
8E42|1|I|G|1177
8E42|1|I|C|1178
8E42|1|I|G|1179
8E42|1|I|U|1180
8E42|1|I|U|1181

Current chains

Chain I

50S ribosomal RNA

Nearby chains