HL_8E42_048

3D structure

PDB id

8E42 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and azithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CG(PSU)AAC(3TD)A(PSU)AACG

Length

13 nucleotides

Bulged bases

8E42|1|I|A|1912, 8E42|1|I|A|1913, 8E42|1|I|C|1914, 8E42|1|I|A|1916

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E42_048 not in the Motif Atlas

Geometric match to HL_2B3J_001

Geometric discrepancy: 0.3337

The information below is about HL_2B3J_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41169.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

4

Unit IDs

8E42|1|I|C|1909
8E42|1|I|G|1910
8E42|1|I|PSU|1911
8E42|1|I|A|1912
8E42|1|I|A|1913
8E42|1|I|C|1914
8E42|1|I|3TD|1915
8E42|1|I|A|1916
8E42|1|I|PSU|1917
8E42|1|I|A|1918
8E42|1|I|A|1919
8E42|1|I|C|1920
8E42|1|I|G|1921

Current chains

Chain I

50S ribosomal RNA

Nearby chains