HL_8E43_023

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

8E43|1|I|A|781, 8E43|1|I|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E43_023 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1196

The information below is about HL_7A0S_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8E43|1|I|U|779
8E43|1|I|G|780
8E43|1|I|A|781
8E43|1|I|A|782
8E43|1|I|A|783
8E43|1|I|G|784
8E43|1|I|G|785

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2