HL_8E43_036

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

8E43|1|I|A|1453, 8E43|1|I|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E43_036 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.1936

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8E43|1|I|C|1451
8E43|1|I|G|1452
8E43|1|I|A|1453
8E43|1|I|C|1454
8E43|1|I|G|1455
8E43|1|I|G|1456
8E43|1|I|U|1457
8E43|1|I|U|1458
8E43|1|I|G|1459

Current chains

Chain I

23S ribosomal RNA

Nearby chains