HL_8E43_049

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

8E43|1|I|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E43_049 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0683

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8E43|1|I|G|1949
8E43|1|I|G|1950
8E43|1|I|U|1951
8E43|1|I|A|1952
8E43|1|I|A|1953
8E43|1|I|G|1954
8E43|1|I|U|1955
8E43|1|I|U|1956
8E43|1|I|C|1957

Current chains

Chain I

23S ribosomal RNA

Nearby chains