HL_8E43_054

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8E43|1|I|A|2268, 8E43|1|I|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E43_054 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0714

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8E43|1|I|C|2264
8E43|1|I|U|2265
8E43|1|I|A|2266
8E43|1|I|A|2267
8E43|1|I|A|2268
8E43|1|I|G|2269
8E43|1|I|A|2270
8E43|1|I|G|2271
8E43|1|I|U|2272
8E43|1|I|A|2273
8E43|1|I|A|2274
8E43|1|I|C|2275
8E43|1|I|G|2276

Current chains

Chain I

23S ribosomal RNA

Nearby chains