HL_8E44_016

3D structure

PDB id

8E44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC09

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

8E44|1|I|U|545, 8E44|1|I|U|546, 8E44|1|I|A|547, 8E44|1|I|G|548, 8E44|1|I|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E44_016 not in the Motif Atlas

Homologous match to HL_7RQB_017

Geometric discrepancy: 0.3357

The information below is about HL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E44|1|I|G|543
8E44|1|I|C|544
8E44|1|I|U|545
8E44|1|I|U|546
8E44|1|I|A|547
8E44|1|I|G|548
8E44|1|I|G|549
8E44|1|I|C|550

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13