HL_8E45_048

3D structure

PDB id

8E45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC17

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CG(PSU)AAC(3TD)A(PSU)AACG

Length

13 nucleotides

Bulged bases

8E45|1|I|A|1913, 8E45|1|I|C|1914

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E45_048 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.3733

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

8E45|1|I|C|1909
8E45|1|I|G|1910
8E45|1|I|PSU|1911
8E45|1|I|A|1912
8E45|1|I|A|1913
8E45|1|I|C|1914
8E45|1|I|3TD|1915
8E45|1|I|A|1916
8E45|1|I|PSU|1917
8E45|1|I|A|1918
8E45|1|I|A|1919
8E45|1|I|C|1920
8E45|1|I|G|1921

Current chains

Chain I

23S ribosomal RNA

Nearby chains