HL_8E46_029

3D structure

PDB id

8E46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

8E46|1|I|A|1095

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E46_029 not in the Motif Atlas

Homologous match to HL_5J7L_212

Geometric discrepancy: 0.5813

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8E46|1|I|G|1091
8E46|1|I|C|1092
8E46|1|I|G|1093
8E46|1|I|U|1094
8E46|1|I|A|1095
8E46|1|I|A|1096
8E46|1|I|U|1097
8E46|1|I|A|1098
8E46|1|I|G|1099
8E46|1|I|C|1100

Current chains

Chain I

23S ribosomal RNA

Nearby chains