HL_8E46_048

3D structure

PDB id

8E46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CG(PSU)AAC(3TD)A(PSU)AACG

Length

13 nucleotides

Bulged bases

8E46|1|I|A|1913, 8E46|1|I|C|1914, 8E46|1|I|A|1916, 8E46|1|I|A|1918

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E46_048 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.3582

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

8E46|1|I|C|1909
8E46|1|I|G|1910
8E46|1|I|PSU|1911
8E46|1|I|A|1912
8E46|1|I|A|1913
8E46|1|I|C|1914
8E46|1|I|3TD|1915
8E46|1|I|A|1916
8E46|1|I|PSU|1917
8E46|1|I|A|1918
8E46|1|I|A|1919
8E46|1|I|C|1920
8E46|1|I|G|1921

Current chains

Chain I

23S ribosomal RNA

Nearby chains