HL_8E47_072

3D structure

PDB id

8E47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC26

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GACACGUGGUAUC

Length

13 nucleotides

Bulged bases

8E47|1|I|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E47_072 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.2619

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8E47|1|I|G|381
8E47|1|I|A|382
8E47|1|I|C|383
8E47|1|I|A|384
8E47|1|I|C|385
8E47|1|I|G|386
8E47|1|I|U|387
8E47|1|I|G|388
8E47|1|I|G|389
8E47|1|I|U|390
8E47|1|I|A|391
8E47|1|I|U|392
8E47|1|I|C|393

Current chains

Chain I

23S ribosomal RNA

Nearby chains