HL_8E48_072

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

GACACGUGGUAUC

Length

13 nucleotides

Bulged bases

8E48|1|I|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E48_072 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.2651

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8E48|1|I|G|381
8E48|1|I|A|382
8E48|1|I|C|383
8E48|1|I|A|384
8E48|1|I|C|385
8E48|1|I|G|386
8E48|1|I|U|387
8E48|1|I|G|388
8E48|1|I|G|389
8E48|1|I|U|390
8E48|1|I|A|391
8E48|1|I|U|392
8E48|1|I|C|393

Current chains

Chain I

23S ribosomal RNA

Nearby chains