HL_8E5T_008

3D structure

PDB id

8E5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E5T_008 not in the Motif Atlas

Homologous match to HL_5TBW_011

Geometric discrepancy: 0.4841

The information below is about HL_5TBW_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8E5T|1|1|U|382
8E5T|1|1|G|383
8E5T|1|1|A|384
8E5T|1|1|A|385
8E5T|1|1|A|386
8E5T|1|1|A|387

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 5

Ribosome biogenesis protein MAK21

Chain 6

NOC2 isoform 1