8E5T Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8E5T_002 | 1/1/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_8E5T_003 | 1/1/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_8E5T_007 | 1/1/304:312 | No text annotation | ||
| HL_8E5T_008 | 1/1/382:387 | GNRA | homologous HL_5TBW_011 NA | |
| HL_8E5T_024 | 1/1/542:549 | No text annotation | ||
| HL_8E5T_011 | 1/1/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_8E5T_012 | 1/1/639:650 | No text annotation | ||
| HL_8E5T_013 | 1/1/687:693 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_8E5T_014 | 1/1/732:737 | GNRA | homologous HL_5TBW_017 NA | |
| HL_8E5T_017 | 1/1/1347:1357 | No text annotation | ||
| HL_8E5T_018 | 1/1/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8E5T_019 | 1/2/69:89 | No text annotation | homologous HL_8C3A_230 NA | |
| HL_8E5T_020 | 1/2/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_8E5T_021 | 1/3/11:17 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_8E5T_025 | 1/3/38:41 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8E5T_001 | No text annotation | ||
| HL_8E5T_004 | Externally structured | ||
| HL_8E5T_005 | No text annotation | ||
| HL_8E5T_006 | No text annotation | ||
| HL_8E5T_009 | No text annotation | ||
| HL_8E5T_010 | No text annotation | ||
| HL_8E5T_015 | Externally structured | ||
| HL_8E5T_016 | No text annotation | ||
| HL_8E5T_022 | No text annotation | ||
| HL_8E5T_023 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8E5T_001 | 1/1/7:8, 1/2/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_8E5T_002 | 1/1/13:15, 1/2/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_8E5T_003 | 1/1/27:28, 1/1/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_8E5T_004 | 1/1/82:89, 1/1/97:103 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_8E5T_005 | 1/1/123:124, 1/1/144:149 | No text annotation | homologous IL_5TBW_007 NA | |
| IL_8E5T_006 | 1/1/125:127, 1/1/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_8E5T_007 | 1/1/164:166, 1/1/256:257 | Single stack bend | homologous IL_5TBW_009 NA | |
| IL_8E5T_008 | 1/1/302:304, 1/1/312:313 | Single stack bend | geometric IL_4WF9_007 IL_90729.1 | |
| IL_8E5T_009 | 1/1/429:431, 1/1/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_8E5T_010 | 1/1/439:441, 1/1/493:494 | No text annotation | ||
| IL_8E5T_011 | 1/1/512:513, 1/1/577:579 | Single bulged A | homologous IL_5TBW_018 NA | |
| IL_8E5T_012 | 1/1/517:525, 1/1/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_8E5T_032 | 1/1/531:538, 1/1/553:561 | No text annotation | homologous IL_8P9A_248 IL_43858.1 | |
| IL_8E5T_030 | 1/1/668:670, 1/1/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_8E5T_016 | 1/1/680:683, 1/1/697:700 | No text annotation | ||
| IL_8E5T_017 | 1/1/725:728, 1/1/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_8E5T_018 | 1/1/752:753, 1/1/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_8E5T_019 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_8E5T_020 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot | geometric IL_7A0S_034 IL_41203.4 | |
| IL_8E5T_021 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U | homologous IL_5TBW_050 NA | |
| IL_8E5T_022 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_8E5T_023 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_8E5T_024 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_8E5T_025 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_8E5T_026 | 1/2/64:66, 1/2/93:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA | |
| IL_8E5T_027 | 1/2/68:69, 1/2/89:91 | Single bulged U | homologous IL_5TBW_146 NA | |
| IL_8E5T_028 | 1/3/26:27, 1/3/51:54 | Major groove intercalation | geometric IL_4WF9_071 IL_82107.4 | |
| IL_8E5T_029 | 1/3/30:34, 1/3/45:48 | No text annotation | geometric IL_8C3A_009 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8E5T_013 | Isolated cWS basepair | ||
| IL_8E5T_014 | No text annotation | ||
| IL_8E5T_015 | Tandem non-canonical cWW pairs | ||
| IL_8E5T_031 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8E5T_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation | homologous J3_8P9A_042 J3_19664.1 | |
| J3_8E5T_002 | 1/1/436:439, 1/1/494:495, 1/1/618:623 | No text annotation | ||
| J3_8E5T_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_8E5T_004 | 1/1/942:944, 1/1/1375:1378, 1/1/1428:1431 | No text annotation | ||
| J5_8E5T_003 | 1/1/112:123, 1/1/149:158, 1/1/263:272, 1/1/293:299, 1/1/316:319 | No text annotation | ||
| J5_8E5T_004 | 1/1/112:124, 1/1/144:158, 1/1/263:272, 1/1/293:299, 1/1/316:319 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8E5T_005 | No text annotation | ||
| J5_8E5T_001 | No text annotation | ||
| J5_8E5T_002 | No text annotation |
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