HL_8E5T_014

3D structure

PDB id

8E5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E5T_014 not in the Motif Atlas

Homologous match to HL_5TBW_017

Geometric discrepancy: 0.1158

The information below is about HL_5TBW_017

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8E5T|1|1|C|732
8E5T|1|1|G|733
8E5T|1|1|C|734
8E5T|1|1|A|735
8E5T|1|1|A|736
8E5T|1|1|G|737

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain z

Ribosomal RNA-processing protein 1