3D structure

PDB id
8EIU (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with A-loop mutations U2554C and U2555C
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EIU_004 not in the Motif Atlas
Homologous match to HL_5J7L_004
Geometric discrepancy: 0.1358
The information below is about HL_5J7L_004
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

8EIU|1|A|C|186
8EIU|1|A|G|187
8EIU|1|A|C|188
8EIU|1|A|A|189
8EIU|1|A|A|190
8EIU|1|A|G|191

Current chains

Chain A
16S rRNA

Nearby chains

Chain T
30S ribosomal protein S20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2567 s