HL_8EIU_099

3D structure

PDB id

8EIU (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A-loop mutations U2554C and U2555C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8EIU|1|a|G|2751, 8EIU|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EIU_099 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0741

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8EIU|1|a|C|2745
8EIU|1|a|U|2746
8EIU|1|a|G|2747
8EIU|1|a|A|2748
8EIU|1|a|A|2749
8EIU|1|a|A|2750
8EIU|1|a|G|2751
8EIU|1|a|C|2752
8EIU|1|a|A|2753
8EIU|1|a|U|2754
8EIU|1|a|C|2755
8EIU|1|a|U|2756
8EIU|1|a|A|2757
8EIU|1|a|A|2758
8EIU|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6

Chain i

50S ribosomal protein L13