HL_8EKB_025

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

8EKB|1|1A|C|886, 8EKB|1|1A|A|887, 8EKB|1|1A|C|888, 8EKB|1|1A|C|889

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EKB_025 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3558

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8EKB|1|1A|C|884
8EKB|1|1A|C|885
8EKB|1|1A|C|886
8EKB|1|1A|A|887
8EKB|1|1A|C|888
8EKB|1|1A|C|889
8EKB|1|1A|A|890
8EKB|1|1A|G|892

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13