HL_8EKC_028

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EKC_028 not in the Motif Atlas

Homologous match to HL_5J7L_164

Geometric discrepancy: 0.1322

The information below is about HL_5J7L_164

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8EKC|1|A|U|1222
8EKC|1|A|G|1223
8EKC|1|A|U|1224
8EKC|1|A|G|1225
8EKC|1|A|A|1226
8EKC|1|A|G|1227

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L20

Chain T

Ribosomal protein L21