HL_8EKC_071

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EKC_071 not in the Motif Atlas

Homologous match to HL_5J7L_003

Geometric discrepancy: 0.1699

The information below is about HL_5J7L_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8EKC|1|a|G|158
8EKC|1|a|G|159
8EKC|1|a|A|160
8EKC|1|a|A|161
8EKC|1|a|A|162
8EKC|1|a|C|163

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20