3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
AACUGAGACACGGU
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_008 not in the Motif Atlas
Homologous match to HL_5J7L_008
Geometric discrepancy: 0.0673
The information below is about HL_5J7L_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81205.3
Basepair signature
cWW-cWW-tWH-F-tWH-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8EMM|1|A|A|320
8EMM|1|A|A|321
8EMM|1|A|C|322
8EMM|1|A|U|323
8EMM|1|A|G|324
8EMM|1|A|A|325
8EMM|1|A|G|326
8EMM|1|A|A|327
8EMM|1|A|C|328
8EMM|1|A|A|329
8EMM|1|A|C|330
8EMM|1|A|G|331
8EMM|1|A|G|332
8EMM|1|A|U|333

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
30S ribosomal protein S16
Chain T
30S ribosomal protein S20

Coloring options:


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