3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CGAAGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_016 not in the Motif Atlas
Homologous match to HL_5J7L_016
Geometric discrepancy: 0.0813
The information below is about HL_5J7L_016
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

8EMM|1|A|C|726
8EMM|1|A|G|727
8EMM|1|A|A|728
8EMM|1|A|A|729
8EMM|1|A|G|730
8EMM|1|A|G|731

Current chains

Chain A
16S rRNA

Nearby chains

Chain O
30S ribosomal protein S15
Chain R
30S ribosomal protein S18
Chain U
30S ribosomal protein S21

Coloring options:


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