3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GAU(2MG)(5MC)AACGC
Length
10 nucleotides
Bulged bases
8EMM|1|A|A|968, 8EMM|1|A|G|971
QA status
Modified nucleotides: 2MG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_020 not in the Motif Atlas
Homologous match to HL_5J7L_021
Geometric discrepancy: 0.267
The information below is about HL_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8EMM|1|A|G|963
8EMM|1|A|A|964
8EMM|1|A|U|965
8EMM|1|A|2MG|966
8EMM|1|A|5MC|967
8EMM|1|A|A|968
8EMM|1|A|A|969
8EMM|1|A|C|970
8EMM|1|A|G|971
8EMM|1|A|C|972

Current chains

Chain A
16S rRNA

Nearby chains

Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain M
30S ribosomal protein S13
Chain Y
Transfer RNA; tRNA
Chain Z
Transfer RNA; tRNA

Coloring options:


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