3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GUUAAGUC
Length
8 nucleotides
Bulged bases
8EMM|1|A|G|1094
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_024 not in the Motif Atlas
Homologous match to HL_4LFB_025
Geometric discrepancy: 0.0686
The information below is about HL_4LFB_025
Detailed Annotation
T-loop related
Broad Annotation
T-loop
Motif group
HL_63894.1
Basepair signature
cWW-cWW-F-F-F
Number of instances in this motif group
18

Unit IDs

8EMM|1|A|G|1089
8EMM|1|A|U|1090
8EMM|1|A|U|1091
8EMM|1|A|A|1092
8EMM|1|A|A|1093
8EMM|1|A|G|1094
8EMM|1|A|U|1095
8EMM|1|A|C|1096

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain G
30S ribosomal protein S7
Chain U
30S ribosomal protein S21

Coloring options:


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