HL_8EMM_048

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8EMM|1|a|G|329, 8EMM|1|a|A|330, 8EMM|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EMM_048 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0574

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8EMM|1|a|G|327
8EMM|1|a|U|328
8EMM|1|a|G|329
8EMM|1|a|A|330
8EMM|1|a|C|331
8EMM|1|a|A|332
8EMM|1|a|G|333
8EMM|1|a|C|334
8EMM|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24