3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GUGAAAAGC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_067 not in the Motif Atlas
Homologous match to HL_5J7L_165
Geometric discrepancy: 0.0983
The information below is about HL_5J7L_165
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

8EMM|1|a|G|1281
8EMM|1|a|U|1282
8EMM|1|a|G|1283
8EMM|1|a|A|1284
8EMM|1|a|A|1285
8EMM|1|a|A|1286
8EMM|1|a|A|1287
8EMM|1|a|G|1288
8EMM|1|a|C|1289

Current chains

Chain a
23S rRNA

Nearby chains

Chain m
50S ribosomal protein L17
Chain r
50S ribosomal protein L22
Chain z
50S ribosomal protein L32

Coloring options:


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