HL_8EMM_071

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

8EMM|1|a|A|1453, 8EMM|1|a|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EMM_071 not in the Motif Atlas

Geometric match to HL_5J7L_169

Geometric discrepancy: 0.0851

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8EMM|1|a|C|1451
8EMM|1|a|G|1452
8EMM|1|a|A|1453
8EMM|1|a|C|1454
8EMM|1|a|G|1455
8EMM|1|a|G|1456
8EMM|1|a|U|1457
8EMM|1|a|U|1458
8EMM|1|a|G|1459

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L17