HL_8EMM_078

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

8EMM|1|a|U|1729, 8EMM|1|a|C|1730, 8EMM|1|a|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EMM_078 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3165

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

8EMM|1|a|C|1727
8EMM|1|a|C|1728
8EMM|1|a|U|1729
8EMM|1|a|C|1730
8EMM|1|a|G|1731
8EMM|1|a|C|1732
8EMM|1|a|G|1733

Current chains

Chain a

23S rRNA

Nearby chains