3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
8EMM|1|a|C|1870
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_082 not in the Motif Atlas
Homologous match to HL_5J7L_180
Geometric discrepancy: 0.4418
The information below is about HL_5J7L_180
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

8EMM|1|a|C|1868
8EMM|1|a|G|1869
8EMM|1|a|C|1870
8EMM|1|a|A|1871
8EMM|1|a|A|1872
8EMM|1|a|G|1873

Current chains

Chain a
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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