3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CUAAAGAGUAACG
Length
13 nucleotides
Bulged bases
8EMM|1|a|A|2268, 8EMM|1|a|C|2275
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_088 not in the Motif Atlas
Homologous match to HL_5J7L_187
Geometric discrepancy: 0.0492
The information below is about HL_5J7L_187
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_91939.2
Basepair signature
cWW-tSH-tHH-tWW-F-F-F
Number of instances in this motif group
8

Unit IDs

8EMM|1|a|C|2264
8EMM|1|a|U|2265
8EMM|1|a|A|2266
8EMM|1|a|A|2267
8EMM|1|a|A|2268
8EMM|1|a|G|2269
8EMM|1|a|A|2270
8EMM|1|a|G|2271
8EMM|1|a|U|2272
8EMM|1|a|A|2273
8EMM|1|a|A|2274
8EMM|1|a|C|2275
8EMM|1|a|G|2276

Current chains

Chain a
23S rRNA

Nearby chains

Chain b
5S ribosomal RNA; 5S rRNA
Chain l
50S ribosomal protein L16
Chain v
50S ribosomal protein L27

Coloring options:


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