3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
UGCAAUGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_090 not in the Motif Atlas
Homologous match to HL_5J7L_189
Geometric discrepancy: 0.1418
The information below is about HL_5J7L_189
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_93324.4
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
24

Unit IDs

8EMM|1|a|U|2324
8EMM|1|a|G|2325
8EMM|1|a|C|2326
8EMM|1|a|A|2327
8EMM|1|a|A|2328
8EMM|1|a|U|2329
8EMM|1|a|G|2330
8EMM|1|a|G|2331

Current chains

Chain a
23S rRNA

Nearby chains

Chain Z
Transfer RNA; tRNA
Chain f
50S ribosomal protein L5
Chain l
50S ribosomal protein L16
Chain v
50S ribosomal protein L27

Coloring options:


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