3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
UGAAGUAG
Length
8 nucleotides
Bulged bases
8EMM|1|a|G|2529
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_095 not in the Motif Atlas
Homologous match to HL_5J7L_194
Geometric discrepancy: 0.0834
The information below is about HL_5J7L_194
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_31585.4
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
20

Unit IDs

8EMM|1|a|U|2528
8EMM|1|a|G|2529
8EMM|1|a|A|2530
8EMM|1|a|A|2531
8EMM|1|a|G|2532
8EMM|1|a|U|2533
8EMM|1|a|A|2534
8EMM|1|a|G|2535

Current chains

Chain a
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L36
Chain g
50S ribosomal protein L6

Coloring options:


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