HL_8EMM_096

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EMM_096 not in the Motif Atlas

Homologous match to HL_5J7L_195

Geometric discrepancy: 0.1067

The information below is about HL_5J7L_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8EMM|1|a|C|2551
8EMM|1|a|OMU|2552
8EMM|1|a|G|2553
8EMM|1|a|U|2554
8EMM|1|a|U|2555
8EMM|1|a|C|2556
8EMM|1|a|G|2557

Current chains

Chain a

23S rRNA

Nearby chains

Chain Y

Transfer RNA; tRNA