3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
8EMM|1|a|G|2751, 8EMM|1|a|C|2755
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_100 not in the Motif Atlas
Homologous match to HL_5J7L_199
Geometric discrepancy: 0.0631
The information below is about HL_5J7L_199
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74055.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

8EMM|1|a|C|2745
8EMM|1|a|U|2746
8EMM|1|a|G|2747
8EMM|1|a|A|2748
8EMM|1|a|A|2749
8EMM|1|a|A|2750
8EMM|1|a|G|2751
8EMM|1|a|C|2752
8EMM|1|a|A|2753
8EMM|1|a|U|2754
8EMM|1|a|C|2755
8EMM|1|a|U|2756
8EMM|1|a|A|2757
8EMM|1|a|A|2758
8EMM|1|a|G|2759

Current chains

Chain a
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L36
Chain g
50S ribosomal protein L6
Chain i
50S ribosomal protein L13

Coloring options:


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