HL_8ETI_003
3D structure
- PDB id
- 8ETI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fkbp39 associated 60S nascent ribosome State 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AUUUCUUUU
- Length
- 9 nucleotides
- Bulged bases
- 8ETI|1|1|U|138, 8ETI|1|1|U|139
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ETI_003 not in the Motif Atlas
- Geometric match to HL_5UD5_001
- Geometric discrepancy: 0.1836
- The information below is about HL_5UD5_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- tRNA D-loop
- Motif group
- HL_89167.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 20
Unit IDs
8ETI|1|1|A|133
8ETI|1|1|U|134
8ETI|1|1|U|135
8ETI|1|1|U|136
8ETI|1|1|C|137
8ETI|1|1|U|138
8ETI|1|1|U|139
8ETI|1|1|U|140
8ETI|1|1|U|141
Current chains
- Chain 1
- RNA (1564-MER)
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35
- Chain j
- 60S ribosomal protein L37-B
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