8ETI Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8ETI_002 | 1/1/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_8ETI_003 | 1/1/133:141 | tRNA D-loop | geometric HL_5UD5_001 HL_89167.1 | |
| HL_8ETI_004 | 1/1/201:208 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_005 NA | |
| HL_8ETI_005 | 1/1/215:219 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_8ETI_006 | 1/1/223:231 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_8ETI_007 | 1/1/365:370 | GNRA | homologous HL_8C3A_010 NA | |
| HL_8ETI_011 | 1/1/623:629 | No text annotation | ||
| HL_8ETI_013 | 1/1/711:721 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_8ETI_018 | 1/1/1179:1186 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_8ETI_021 | 1/1/1378:1391 | No text annotation | homologous HL_8C3A_029 NA | |
| HL_8ETI_022 | 1/1/1437:1442 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8ETI_027 | 1/1/3206:3220 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8ETI_029 | 1/1/3340:3347 | No text annotation | homologous HL_8C3A_070 NA | |
| HL_8ETI_031 | 1/2/55:64 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8ETI_032 | 1/2/81:86 | GNRA variation | geometric HL_5TBW_074 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8ETI_001 | No text annotation | ||
| HL_8ETI_008 | GNRA | ||
| HL_8ETI_009 | No text annotation | ||
| HL_8ETI_010 | No text annotation | ||
| HL_8ETI_012 | No text annotation | ||
| HL_8ETI_014 | GNRA | ||
| HL_8ETI_015 | No text annotation | ||
| HL_8ETI_016 | No text annotation | ||
| HL_8ETI_017 | No text annotation | ||
| HL_8ETI_019 | No text annotation | ||
| HL_8ETI_020 | GNRA wlth tandem sheared | ||
| HL_8ETI_023 | No text annotation | ||
| HL_8ETI_024 | No text annotation | ||
| HL_8ETI_025 | No text annotation | ||
| HL_8ETI_026 | GNRA | ||
| HL_8ETI_028 | No text annotation | ||
| HL_8ETI_030 | No text annotation | ||
| HL_8ETI_033 | No text annotation | ||
| HL_8ETI_034 | No text annotation | ||
| HL_8ETI_035 | Externally structured | ||
| HL_8ETI_036 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8ETI_003 | 1/1/27:29, 1/1/55:58 | No text annotation | ||
| IL_8ETI_004 | 1/1/82:89, 1/1/97:103 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_8ETI_013 | 1/1/196:198, 1/1/211:212 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_8ETI_015 | 1/1/345:347, 1/2/33:34 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_8ETI_016 | 1/1/384:387, 1/1/398:411 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_8ETI_017 | 1/1/412:418, 1/2/21:27 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_8ETI_021 | 1/1/523:524, 1/1/601:603 | Single bulged A | geometric IL_1I9X_002 NA | |
| IL_8ETI_022 | 1/1/528:536, 1/1/590:597 | No text annotation | geometric IL_5TBW_019 NA | |
| IL_8ETI_024 | 1/1/693:695, 1/1/824:826 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_8ETI_025 | 1/1/705:709, 1/1/723:727 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_8ETI_026 | 1/1/752:755, 1/1/769:773 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_8ETI_027 | 1/1/835:837, 1/1/970:972 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_8ETI_028 | 1/1/837:841, 1/1/963:970 | No text annotation | ||
| IL_8ETI_029 | 1/1/1001:1002, 1/1/1142:1144 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_8ETI_031 | 1/1/1015:1017, 1/1/1131:1132 | Single bulged G | geometric IL_5TBW_037 NA | |
| IL_8ETI_034 | 1/1/1198:1202, 1/1/1359:1363 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_8ETI_035 | 1/1/1204:1211, 1/1/1356:1357 | SSU/LSU pseudoknot | geometric IL_5TBW_049 NA | |
| IL_8ETI_036 | 1/1/1211:1213, 1/1/1355:1356 | Single bulged U | homologous IL_5TBW_050 NA | |
| IL_8ETI_037 | 1/1/1217:1225, 1/1/1345:1351 | No text annotation | ||
| IL_8ETI_044 | 1/1/1410:1412, 1/1/1462:1465 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_8ETI_045 | 1/1/1419:1421, 1/1/1454:1455 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_8ETI_046 | 1/1/1422:1429, 1/1/1449:1453 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_8ETI_047 | 1/1/1432:1434, 1/1/1445:1446 | Single bulged U | geometric IL_4WF9_088 IL_97561.1 | |
| IL_8ETI_048 | 1/1/1478:1484, 1/1/2442:2447 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_8ETI_075 | 1/1/3098:3103, 1/1/3235:3242 | No text annotation | ||
| IL_8ETI_053 | 1/1/3100:3103, 1/1/3235:3240 | Double sheared | homologous IL_5TBW_114 NA | |
| IL_8ETI_059 | 1/1/3274:3282, 1/1/3305:3310 | No text annotation | ||
| IL_8ETI_076 | 1/1/3285:3288, 1/1/3298:3302 | No text annotation | ||
| IL_8ETI_068 | 1/2/76:77, 1/2/97:99 | Single bulged U | geometric IL_5TBW_146 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8ETI_001 | Single bulged C | ||
| IL_8ETI_002 | Single bulged U | ||
| IL_8ETI_005 | No text annotation | ||
| IL_8ETI_006 | Isolated non-canonical cWW pair | ||
| IL_8ETI_073 | Single bulged U | ||
| IL_8ETI_007 | Isolated non-canonical cWW with bulges | ||
| IL_8ETI_008 | No text annotation | ||
| IL_8ETI_009 | No text annotation | ||
| IL_8ETI_010 | Single bulged A | ||
| IL_8ETI_011 | No text annotation | ||
| IL_8ETI_012 | Tandem non-canonical cWW pairs | ||
| IL_8ETI_014 | Isolated non-canonical cWW pair | ||
| IL_8ETI_018 | Isolated non-canonical cWW pair | ||
| IL_8ETI_019 | No text annotation | ||
| IL_8ETI_020 | Isolated cWH basepair | ||
| IL_8ETI_023 | No text annotation | ||
| IL_8ETI_074 | Isolated cWH basepair | ||
| IL_8ETI_077 | No text annotation | ||
| IL_8ETI_030 | No text annotation | ||
| IL_8ETI_032 | Isolated non-canonical cWW pair | ||
| IL_8ETI_033 | Tandem non-canonical cWW pairs | ||
| IL_8ETI_038 | No text annotation | ||
| IL_8ETI_039 | Single bulged U | ||
| IL_8ETI_040 | Kink-turn | ||
| IL_8ETI_041 | Self complementary | ||
| IL_8ETI_042 | No text annotation | ||
| IL_8ETI_043 | Major groove platform with extra cWW | ||
| IL_8ETI_049 | No text annotation | ||
| IL_8ETI_050 | No text annotation | ||
| IL_8ETI_051 | Isolated non-canonical cWW pair | ||
| IL_8ETI_052 | Major groove platform with intercalation | ||
| IL_8ETI_054 | Isolated non-canonical cWW pair | ||
| IL_8ETI_055 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8ETI_056 | No text annotation | ||
| IL_8ETI_057 | No text annotation | ||
| IL_8ETI_058 | No text annotation | ||
| IL_8ETI_060 | No text annotation | ||
| IL_8ETI_061 | No text annotation | ||
| IL_8ETI_062 | Tandem non-canonical cWW pairs | ||
| IL_8ETI_063 | Single bulged U | ||
| IL_8ETI_064 | Single bulged U | ||
| IL_8ETI_065 | Isolated non-canonical cWW pair | ||
| IL_8ETI_066 | No text annotation | ||
| IL_8ETI_067 | Isolated non-canonical cWW pair | ||
| IL_8ETI_069 | No text annotation | ||
| IL_8ETI_070 | Multiple bulged bases | ||
| IL_8ETI_071 | No text annotation | ||
| IL_8ETI_078 | Intercalated cWW | ||
| IL_8ETI_072 | Other IL |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8ETI_001 | 1/1/113:123, 1/1/155:164, 1/1/271:275 | No text annotation | homologous J3_8P9A_042 J3_69230.1 | |
| J3_8ETI_007 | 1/1/113:124, 1/1/150:164, 1/1/271:275 | No text annotation | ||
| J3_8ETI_008 | 1/1/192:196, 1/1/212:221, 1/1/233:240 | No text annotation | ||
| J3_8ETI_009 | 1/1/348:364, 1/1/371:376, 1/2/29:32 | No text annotation | homologous J3_8C3A_047 NA | |
| J3_8ETI_002 | 1/1/377:384, 1/1/411:412, 1/2/27:28 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_8ETI_010 | 1/1/377:387, 1/1/398:412, 1/2/27:28 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_8ETI_003 | 1/1/513:514, 1/1/612:621, 1/1/631:636 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_8ETI_006 | 1/2/52:53, 1/2/66:72, 1/2/104:108 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_8ETI_001 | 1/1/112:113, 1/1/275:280, 1/1/301:307, 1/1/324:327 | No text annotation | homologous J4_8C3A_001 NA | |
| J4_8ETI_002 | 1/1/192:196, 1/1/212:215, 1/1/219:221, 1/1/233:240 | No text annotation | ||
| J5_8ETI_001 | 1/1/20:22, 1/2/43:50, 1/2/110:115, 1/2/123:124, 1/2/145:147 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
| J5_8ETI_002 | 1/1/683:688, 1/1/831:834, 1/1/973:976, 1/1/1409:1410, 1/1/1465:1471 | No text annotation | homologous J5_8C3A_002 NA | |
| J6_8ETI_001 | 1/1/22:27, 1/1/58:68, 1/1/75:79, 1/1/106:110, 1/1/329:339, 1/2/40:43 | No text annotation | ||
| J7_8ETI_001 | 1/1/981:989, 1/1/996:1000, 1/1/1145:1148, 1/1/1172:1177, 1/1/1188:1192, 1/1/1369:1370, 1/1/1399:1404 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8ETI_004 | No text annotation | ||
| J3_8ETI_011 | No text annotation | ||
| J3_8ETI_005 | No text annotation | ||
| J4_8ETI_003 | No text annotation |
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