HL_8ETI_004
3D structure
- PDB id
- 8ETI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fkbp39 associated 60S nascent ribosome State 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUGGAACA
- Length
- 8 nucleotides
- Bulged bases
- 8ETI|1|1|C|207
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ETI_004 not in the Motif Atlas
- Homologous match to HL_5TBW_005
- Geometric discrepancy: 0.0985
- The information below is about HL_5TBW_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_58705.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
8ETI|1|1|U|201
8ETI|1|1|U|202
8ETI|1|1|G|203
8ETI|1|1|G|204
8ETI|1|1|A|205
8ETI|1|1|A|206
8ETI|1|1|C|207
8ETI|1|1|A|208
Current chains
- Chain 1
- RNA (1564-MER)
Nearby chains
- Chain 3
- Protein mak16
- Chain 5
- Ribosome biogenesis protein nsa1
- Chain C
- 60S ribosomal protein L4-B
- Chain Y
- 60S ribosomal protein L26
- Chain e
- 60S ribosomal protein L32-A
- Chain x
- Brix domain-containing protein C4F8.04
Coloring options: