HL_8ETI_008

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ETI_008 not in the Motif Atlas

Homologous match to HL_5TBW_011

Geometric discrepancy: 0.1994

The information below is about HL_5TBW_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8ETI|1|1|U|390
8ETI|1|1|G|391
8ETI|1|1|A|392
8ETI|1|1|A|393
8ETI|1|1|A|394
8ETI|1|1|A|395

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain x

Brix domain-containing protein C4F8.04