HL_8ETI_014

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ETI_014 not in the Motif Atlas

Homologous match to HL_5TBW_017

Geometric discrepancy: 0.5469

The information below is about HL_5TBW_017

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8ETI|1|1|C|759
8ETI|1|1|C|760
8ETI|1|1|U|761
8ETI|1|1|U|762
8ETI|1|1|G|763
8ETI|1|1|U|764
8ETI|1|1|G|765

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain 4

Ribosomal RNA-processing protein 1 homolog

Chain Q

60S ribosomal protein L18-A