HL_8ETI_026

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ETI_026 not in the Motif Atlas

Homologous match to HL_8C3A_066

Geometric discrepancy: 0.2081

The information below is about HL_8C3A_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8ETI|1|1|C|3121
8ETI|1|1|G|3122
8ETI|1|1|A|3123
8ETI|1|1|G|3124
8ETI|1|1|A|3125
8ETI|1|1|G|3126

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain b

Probable nucleolar GTP-binding protein 1

Chain r

Ribosome biogenesis protein nsa2