HL_8ETI_032

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ETI_032 not in the Motif Atlas

Geometric match to HL_5TBW_074

Geometric discrepancy: 0.294

The information below is about HL_5TBW_074

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8ETI|1|2|U|81
8ETI|1|2|U|82
8ETI|1|2|G|83
8ETI|1|2|C|84
8ETI|1|2|A|85
8ETI|1|2|G|86

Current chains

Chain 2

RNA (152-MER)

Nearby chains

Chain Y

60S ribosomal protein L26

Chain h

60S ribosomal protein L35