HL_8EUB_004

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

8EUB|1|A1|U|133, 8EUB|1|A1|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EUB_004 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.1172

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

8EUB|1|A1|C|132
8EUB|1|A1|U|133
8EUB|1|A1|U|134
8EUB|1|A1|C|135
8EUB|1|A1|G|136

Current chains

Chain A1

28S rRNA

Nearby chains

Chain AN

60S ribosomal protein L15-A

Chain Ah

60S ribosomal protein L35-A