HL_8EUB_038

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GUUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EUB_038 not in the Motif Atlas

Homologous match to HL_5TBW_038

Geometric discrepancy: 0.0737

The information below is about HL_5TBW_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8EUB|1|A1|G|1719
8EUB|1|A1|U|1720
8EUB|1|A1|U|1721
8EUB|1|A1|U|1722
8EUB|1|A1|A|1723
8EUB|1|A1|U|1724
8EUB|1|A1|C|1725

Current chains

Chain A1

28S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain Ap

60S ribosomal protein L43-A