HL_8EUB_044

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CGGGUACG

Length

8 nucleotides

Bulged bases

8EUB|1|A1|G|1954, 8EUB|1|A1|U|1955, 8EUB|1|A1|A|2093

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EUB_044 not in the Motif Atlas

Geometric match to HL_8C3A_006

Geometric discrepancy: 0.1829

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8EUB|1|A1|C|1951
8EUB|1|A1|G|1952
8EUB|1|A1|G|1953
8EUB|1|A1|G|1954
8EUB|1|A1|U|1955
8EUB|1|A1|A|2093
8EUB|1|A1|C|2094
8EUB|1|A1|G|2095

Current chains

Chain A1

28S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain BI

40S ribosomal protein S8-A