HL_8EUB_048

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

A(A2M)GAAAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EUB_048 not in the Motif Atlas

Geometric match to HL_4WF9_041

Geometric discrepancy: 0.333

The information below is about HL_4WF9_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65167.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8EUB|1|A1|A|2219
8EUB|1|A1|A2M|2220
8EUB|1|A1|G|2221
8EUB|1|A1|A|2222
8EUB|1|A1|A|2223
8EUB|1|A1|A|2224
8EUB|1|A1|U|2225
8EUB|1|A1|U|2226

Current chains

Chain A1

28S rRNA

Nearby chains

Chain Ai

60S ribosomal protein L36-A

Chain Ao

60S ribosomal protein L42-A