HL_8EUB_067

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EUB_067 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.0713

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8EUB|1|A1|U|3068
8EUB|1|A1|G|3069
8EUB|1|A1|A|3070
8EUB|1|A1|U|3071
8EUB|1|A1|C|3072
8EUB|1|A1|A|3073

Current chains

Chain A1

28S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain AU

60S ribosomal protein L22-A

Chain Ad

60S ribosomal protein L31-A